With the released of Pangu iOS 9 – 9.0.2 untethered jailbreak, Jay Freeman aka saurik has released an update for
Cydia Substrate to make it compatible with Pangu’s iOS 9 – iOS 9.0.2 jailbreak. Cydia
Substrate is the underlying framework that all jailbreak tweaks depend upon.

Saurik has pointed out that Cydia developers still need to update
their jailbreak tweaks to make them compatible with iOS 9.
Cydia Substrate 0.9.6000 includes significant changes to make it
compatible with Pangu’s iOS 9 jailbreak

Saurik also says that Cydia Substrate 0.9.6000 has made massive internal
changes to be compatible with the latest jailbreak for iOS 9 from Pangu.

To update Cydia Substrate, go to the Updates tab in Cydia to install the
latest version of the Cydia Substrate.
Installing tweaks that are not compatible with iOS 9 – iOS 9.0.2 could
result in reboot loops or force you to restore your device, so be careful.
Stay updated for Compatible tweaks on iOS 9.
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